SpineS

Spine Analyser Software

Publications


"Nonparametric Joint Shape and Feature Priors for Image Segmentation" Ertunc Erdil, Muhammad Usman Ghani, Lavdie Rada, Ali Özgür Argunsah, Devrim Unay, Tolga Tasdizen, and Müjdat Cetin IEEE Transactions on Image Processing [code]



"3D Dendritic Spine Segmentation Using Nonparametric Shape Priors" Erdem Bocugoz, Ertunc Erdil, Ali Özgür Argunsah, Devrim Unay, and Müjdat Cetin IEEE International Conference on Signal Processing, Communications Applications, 2017, Antalya (in Turkish) [PDF]



"Disjuctive Normal Shape Boltzmann Machine" Ertunc Erdil, Fitsum Mesadi, Tolga Tasdizen, and Müjdat Cetin IEEE International Conference on Acoustics, Speech and Signal Processing, 2017, New Orleans [PDF]



"Shape and appearance features based dendritic spine classification" Muhammad Usman Ghani, Fitsum Mesadi, Sumeyra Demir Kanik, Ali Özgür Argunsah, Anna Felicity Hobbiss, Inbal Israely, Devrim Unay, Tolga Tasdizen, and Müjdat Cetin Journal of Neuroscience Methods [data] [code]



"Dendritic Spine Shape Analysis: A Clustering Perspective" Muhammad Usman Ghani, Ertunç Erdil, Sumeyra Demir Kanık, Ali Özgür Argunşah, Anna Felicity Hobbiss, Inbal Israely, Devrim Ünay, Tolga Taşdizen, Müjdat Çetin BioImage Computing Workshop of European Conference on Computer Vision (ECCV), 2016, Amsterdam [PDF]



"Nonparametric Joint Shape and Feature Priors for Segmentation of Dendritic Spines" Ertunç Erdil, Lavdie Rada, Ali Özgür Argunşah, Inbal Israely, Devrim Ünay, Tolga Taşdizen, Müjdat Çetin IEEE International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), 2016, Prague [PDF]



"On Comparison of Manifold Learning Techniques for Dendritic Spine Classification" Muhammad Usman Ghani, Ali Özgür Argunşah, Inbal Israely, Devrim Ünay, Tolga Taşdizen, Müjdat Çetin IEEE International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), 2016, Prague [PDF]



"Dendritic Spine Shape Analysis using Disjunctive Normal Shape Models" Muhammad Usman Ghani, Fitsum Mesadi, Sümeyra Demir Kanık, Ali Özgür Argunşah, Inbal Israely, Devrim Ünay, Tolga Taşdizen, Müjdat Çetin IEEE International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), 2016, Prague [PDF]



"Dendritic Spine Shape Classification from Two-Photon Microscopy Images" Muhammad Usman Ghani, Sümeyra Demir Kanık, Ali Özgür Argunşah, Tolga Taşdizen, Devrim Ünay, Müjdat Çetin IEEE 23st International Conference on Signal Processing, Communications Applications, 2015, Malatya (in Turkish). [PDF]


"Automated Dendritic Spine Tracking on 2-Photon Microscopic Images" Bike Kılıç, Lavdie Rada, Ertunç Erdil, A. Özgür Argunşah, Müjdat Çetin, Devrim Ünay IEEE 23st International Conference on Signal Processing, Communications Applications, 2015, Malatya (in Turkish). [PDF]


"A Joint Classification and Segmentation Approach for Dendritic Spine Segmentation in 2-Photon Microscopy Images" Ertunç Erdil, A. Özgür Argunşah, Tolga Taşdizen, Devrim Ünay, Müjdat Çetin, IEEE International Symposium on BIOMEDICAL IMAGING: From Nano to Macro (ISBI), 2015, New York [PDF]


"Automatic Dendritic Spine Detection Using Multiscale Dot Enhancement Filter and SIFT Features" Lavdie Rada, Ertunç Erdil, A. Özgür Argunsah, Devrim Ünay, Müjdat Çetin, IEEE International Conference on Image Processing (ICIP), 2014, Paris. [PDF]


"SpineS: An Automatic Tool for Finding Volume Changes of Dendritic Spines in Time in 2-Photon Microscopy Images " Ertunç Erdil, A. Özgür Argunsah, Devrim Ünay, Müjdat Çetin, 12th National Neuroscience Congress, 2014, İstanbul (Poster Presentation, in Turkish). [PDF]


"Biomedical Image Time Series Registration with Particle Filtering" A. Murat Yagci, Ertunç Erdil, A. Özgür Argunsah, Devrim Ünay, Müjdat Çetin, IEEE 21st International Conference on Signal Processing, Communications Applications, 2013, Girne (in Turkish). [PDF]


"A Watershed and Active Contours Based Methods for Dendritic Spine Segmentation in 2-Photon Microscopy Images" Ertunç Erdil, A. Özgür Argunsah, Devrim Ünay, Müjdat Çetin, IEEE 21st International Conference on Signal Processing, Communications Applications, 2013, Girne (in Turkish). [PDF]


"A Tool for Automatic Dendritic Spine Detection and Analysis, Part 1: Dendritic Spine Detection Using Multi-Level Region-Based Segmentation" Ertunç Erdil, A. Murat Yagci, A. Özgür Argunsah, Yazmin Ramiro-Cortez, Anna F. Hobbiss, Inbal Israely, Devrim Ünay, IEEE 3rd International Conference on Image Processing Theory, Tools and Applications, 2012, Istanbul. [PDF]